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Thesis Documents
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Education
2013 - 2018
2013 - 2018Doctorate
Karadeniz Technical University, Fen Bilimleri Enstitüsü, Biyoloji/Moleküler Biyoloji, Turkey
2015 - 2017
2015 - 2017Doctorate
Dartmouth College, Thayer School Of Engineering , Chemical And Biochemical Engineering / Energy Technologies , United States Of America
2010 - 2012
2010 - 2012Postgraduate
Recep Tayyip Erdogan University, Fen Bilimleri Enstitüsü, Biyoloji Anabilimdalı / Moleküler Biyoloji , Turkey
2003 - 2004
2003 - 2004Postgraduate
Selcuk University, Instıtute Of Scıence, Ortaöğretim Fen Ve Matematik Alanları Eğitimi, Turkey
1999 - 2003
1999 - 2003Undergraduate
Selcuk University, Fen Edebiyat Fakültesi, Biyoloji, Turkey
Dissertations
2018
2018Doctorate
Modification of Hydrogen Metabolism for Improved Ethanol Production in Thermophilic Bacteria (İngilizce)
Karadeniz Technical University, Fen Bilimleri Enstitüsü, BİYOLOJİ/ MOLKEÜLER BİYOLOJİ
2012
2012Postgraduate
Anoxybacillus flavithermus WK1 AfCDA geninin klonlanması, ekspresyonu, saflaştırılması ve biyokimyasal karakterizasyonu
Recep Tayyip Erdogan University, Fen Bilimleri Enstitüsü, Biyoloji Anabilimdalı / Moleküler Biyoloji Bilim Dalı
Foreign Languages
C1 Advanced
C1 AdvancedEnglish
Certificates, Courses and Trainings
2014
2014Bitki Biyoteknolojisinde DNA Markır Uygulamaları ve Gen İfadesi Analiz Yöntemleri
Vocational Course
Ankara Üniversitesi Biyoteknoloji Enstitüsü
2009
2009Bilgisayar İşletmenliği
IT
MEB
Research Areas
Research Areas Based on Academic Activities
Avesis Research Areas
WoS Research Areas
Scopus Research Areas
Academic Positions
2026 - Present
2026 - PresentAssociate Professor
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü
2022 - Present
2022 - PresentAssistant Professor
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü
2018 - 2022
2018 - 2022Research Assistant PhD
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü
2011 - 2018
2011 - 2018Research Assistant
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü
2015 - 2017
2015 - 2017Other
Dartmouth College, Thayer School Of Engineering / Chemical And Biochemical Engineering / Energy Technologies, Chemical And Biochemical Engineering / Environmental Engineering
Supervised Theses
2025
2025Postgraduate
Çay [Camellia sinensis (L.) O. Kuntze] Bitkisi ve Toprağı ile Etkileşimli, Fitohormon Degrade Eden Bakterilerin İzolasyonu ve Enzim Aktivitelerinin Belirlenmesi
Eminoğlu A. (Advisor)
A.YILMAZ(Student)
2025
2025Postgraduate
Dini İnancın VMAT2/Slc18a2 Gen Ekspresyonu Üzerine Etkisinin Belirlenmesi
Eminoğlu A., Vural M. E. (Co-Advisor)
C.YILDIZ(Student)
Taught Courses and Trainings
2022 - 2022
2022 - 2022Çayda Uygulamalı Moleküler Teknikler Eğitimi I
Application Research Center - Training
Eminoğlu A., Beriş F. Ş., Güzel İzmirli Ş.
Articles
2026
20261. Flush-dependent formation of industrial black tea liquor color: Integrating oxidation pigments with physicochemical quality indices through predictive modeling
Dönmez Akdağ G., Subaşı H., Alikoç D., Eminoğlu A.
FOOD RESEARCH INTERNATIONAL , vol.245, no.1202025, pp.1-15, 2026 (SCI-Expanded, Scopus)
2026
20262. Isolation and Enzyme Activity Profiling of Phytohormone-Degrading Bacteria from Soil, Rhizosphere, and Tissues within the Camellia sinensis Ecosystem
Eminoğlu A., Yılmaz A.
JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES
, no.2026, pp.1-9, 2026 (TRDizin)
2026
20263. Identification and Development of Pathogen and Pest Specific Defense-Resistance Associated SSR Marker Candidates Assisted by Machine Learning and Discovery of Putative QTL Hotspots in Camellia sinensis
Eminoğlu A.
PLANTS
, vol.15, no.3, pp.1-32, 2026 (SCI-Expanded, Scopus)
2026
20264. A low-toxicity surface sterilization approach for efficient in vitro propagation of tea (Camellia sinensis (L.) O. Kuntze) using alternative antifungal agents
DİNÇER D., Dundar H., BEKİRYAZICI F., EMİNOĞLU A., GÜZEL İZMİRLİ Ş., BERİŞ F. Ş., et al.
SOUTH AFRICAN JOURNAL OF BOTANY
, vol.188, pp.180-190, 2026 (SCI-Expanded, Scopus)
2025
20255. SSR genotyping of 200 tea (Camellia sinensis) clones obtained by selection and DNA barcoding of 12 varietal registration candidates
Eminoğlu A., Izmirli S. G., Beriş F. Ş., Dinçer D., Yazıcı K.
BMC PLANT BIOLOGY
, vol.25, no.1, 2025 (SCI-Expanded, Scopus)
2025
20256. Molecular diversity of Klebsiella pneumoniae clinical isolates: antimicrobial resistance, virulence, and biofilm formation
Kafa A., Aslan R., Dastan S., ÇELİK C., Hasbek M., EMİNOĞLU A.
NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS , vol.44, no.5, pp.361-377, 2025 (SCI-Expanded, Scopus)
2021
20217. SURVEY FOR THE PATHOGENIC CHYTRID FUNGI BATRACHOCHYTRIUM DENDROBATIDIS AND B. SALAMANDRIVORANS ON THE CAUCASIAN SALAMANDER IN NORTHEASTERN TURKEY
Altunışık A., Gül S., Altunisik S., Eminoğlu A.
HERPETOLOGICAL CONSERVATION AND BIOLOGY
, vol.16, no.3, pp.534-541, 2021 (SCI-Expanded, Scopus)
2018
20188. Molecular and in silico cloning, identification, and preharvest period expression analysis of a putative cytochrome P450 monooxygenase gene from Camellia sinensis (L.) Kuntze (tea)
Eminoğlu A., Akturk Dizman Y., Guzel Ş., Beldüz A. O.
TURKISH JOURNAL OF BIOLOGY
, vol.42, no.1, pp.1-11, 2018 (SCI-Expanded, Scopus, TRDizin)
2017
20179. Deletion of the hfsB gene increases ethanol production in Thermoanaerobacterium saccharolyticum and several other thermophilic anaerobic bacteria
Eminoğlu A., Murphy S. J., Maloney M., Lanahan A., Giannone R. J., Hettich R. L., et al.
BIOTECHNOLOGY FOR BIOFUELS
, vol.10, 2017 (SCI-Expanded, Scopus)
2016
201610. Sulfonamide inhibition studies of the beta-carbonic anhydrase from the newly discovered bacterium Enterobacter sp B13
Eminoğlu A., Vullo D., Asik A., Çolak D. N., Çanakçı S., Beldüz A. O., et al.
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
, vol.26, no.7, pp.1821-1826, 2016 (SCI-Expanded, Scopus)
2016
201611. Cloning, expression and biochemical characterization of a beta-carbonic anhydrase from the soil bacterium Enterobacter sp B13
Eminoğlu A., Vullo D., Asik A., Colak D. N., Supuran C. T., Çanakçı S., et al.
JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY
, vol.31, no.6, pp.1111-1118, 2016 (SCI-Expanded, Scopus)
2015
201512. Cloning, Purification and Characterization of Acetyl Xylane Esterase from Anoxybacillus flavithermus DSM 2641(T) with Activity on Low Molecular-Weight Acetates
Eminoğlu A., Ulker S., Sandallı C.
PROTEIN JOURNAL
, vol.34, no.4, pp.237-242, 2015 (SCI-Expanded, Scopus)
Papers Presented at Peer-Reviewed Scientific Conferences
2026
20261. Modeling m6A Motif Enrichment in the 3′UTR Regions of Nitrogen Metabolism and Phenylpropanoid Pathway Genes in Tea (Camellia sinensis) Relative to the Genomic Background
Eminoğlu A.
13. Uluslararası Ankara Bilimsel Araştırmalar Kongresi, Ankara, Turkey, 1 - 03 March 2026, pp.1-2, (Summary Text)
2026
20262. A Regex-Based Screening Model for 8-Ligand Metal-Binding RING and CHY Zinc Finger Domains in the Tea Proteome
Eminoğlu A.
8TH INTERNATIONAL BLACK SEA MODERN SCIENTIFIC RESEARCH CONGRESS, Giresun, Turkey, 21 - 22 February 2026, pp.1, (Summary Text)
2024
20243. Doku Kültürüyle Üretilen Türk Çay Genotiplerinde Somaklonal Varyasyonun SSR Markörler Kullanılarak Tespiti
Eminoğlu A., Güzel İzmirli Ş., Beriş F. Ş., Dinçer D., Yazıcı K.
7th International Anatolian Agriculture, Food, Environment and Biology Congress, Kastamonu, Turkey, 26 - 29 September 2024, pp.85, (Summary Text)
2024
20244. Seleksiyonla Elde Edilen Çay Çeşit Adaylarının Genotiplendirilmesinde SSR Markörlerin Değerlendirilmesi
Eminoğlu A., Güzel İzmirli Ş., Beriş F. Ş., Dinçer D., Polat A., Yazıcı K.
Ulusal Çay Kongresi, Rize, Turkey, 21 - 23 May 2024, pp.1-2, (Summary Text)
2024
20245. Seleksiyon Sonrası Seçilmiş En İyi Çay Çeşitlerinin Doku Kültürü ile Üretiminde Sürgün Oluşumu için En Uygun Oksin ve Dozlarının Belirlenmesi
Dinçer D., Dündar H., Bekiryazıcı F., Eminoğlu A., Güzel İzmirli Ş., Beriş F. Ş., et al.
Ulusal Çay Kongresi, Rize, Turkey, 21 - 23 May 2024, pp.24, (Summary Text)
2024
20246. TÜRKİYE ULUSAL ÇAY GEN HAVUZUNUN KURULMASI
Yazıcı K., Polat A., Haznedar A., Çeper Ilgaz Ş., Akbulut M., Şavşatlı Y., et al.
ULUSAL ÇAY KONGRESİ, Rize, Turkey, 21 - 23 May 2024, pp.18-19, (Summary Text)
2018
20187. Camellia sinensis (L.) Kuntze (Çay) Bitkisine Ait Sitokrom P450 Monooksijenaz Geninin Genetik Polimorfizminin Belirlenmesi
EMİNOĞLU A., AKTÜRK DİZMAN Y., GÜZEL Ş.
1st International Plant Biology Congress (ICONBP), Konya, Turkey, 10 - 12 May 2018, vol.X, (Summary Text)
2017
20178. Introducing thermophilic high ethanol-yielding producing pathways into Clostridium thermocellum
Hon S., Olson D. G., Holwerda E., Murphy S. J., Tian L., Lanahan A., et al.
39th Symposium on Biotechnology for Fuels and Chemicals (SBFC), California, United States Of America, 1 - 12 May 2017, vol.., pp.1, (Summary Text)
2016
20169. Understanding the Role of HfsB in Clostridium thermocellum for Improved Ethanol Production
Eminoğlu A., Olson D. G., Lynd R. L.
14th International Conference on the Genetics, Physiology and Synthetic Biology of Solvent- and Acid-forming Clostridia, New Hampshire, United States Of America, 28 - 31 August 2016, vol.14, no.87, pp.62, (Summary Text)
2016
201610. Heterologous expression of mutant Thermoanaerobacterium saccharolyticum hfs hydrogenase for improving Ethanol production in ?hydG?ech strain of Clostridium thermocellum
EMİNOĞLU A., Olson D. G., Beldüz A. O., Lynd R. L.
5th International Molecular Biology and Biotechnology Congress' 2016, Üsküp, Macedonia, 25 - 29 August 2016, vol.1, no.1, (Summary Text)
2016
201611. Understanding the role of the hfs hydrogenase in Thermoanaerobacterium saccharolyticum
Eminoğlu A., Olson D. G., Lynd R. L.
2016 SIMB Annual Meeting and Exhibition, Louisiana, United States Of America, 24 - 28 July 2016, vol.1, no.11, pp.1, (Summary Text)
2015
201512. Prolin-Kuyruğun Anoxybacillus sp. Litik Murein Transglikosilazın Optimum Sıcaklıkve pH’sı Üzerine Etkisi
Ceylan E., Eminoğlu A., Güler H. İ., Kurnaz Z., Beldüz A. O.
3. Ulusal Moleküler Biyoloji ve Biyoteknoloji Kongresi, Afyonkarahisar, Turkey, 21 - 24 August 2015, vol.1, no.1, pp.64, (Summary Text)
2014
201413. In silico Analysis and Comparative Modelling of Camellia sinensis Heat Shock Protein 70 (Hsp70)
Eminoğlu A., Özer A.
3rd Molecular Biology and Biotechnology Congress, Sarajevo, Bosnia And Herzegovina, 2 - 06 June 2014, vol.1, no.166, pp.220, (Summary Text)
2014
201414. Expression and Zymogram Analysis of a ß-class Carbonic Anhydrase from Enterobacter asburiae
Eminoğlu A., Aşık A., Çolak D. N., Çanakçı S., Beldüz A. O.
3rd Molecular Biology and Biotechnology Congress, Sarajevo, Bosnia And Herzegovina, 2 - 06 June 2014, vol.1, no.167, pp.219, (Summary Text)
2012
201215. Anoxybacillus flavithermus WK1’den Ksilanaz/Kitin deasetilazGeninin Klonlanması, Ekspresyonu, Saflaştırılması ve EnzimatikKarakterizasyonu
Eminoğlu A., Sandallı C.
21.Ulusal Biyoloji Kongresi, İzmir, Turkey, 3 - 07 September 2012, vol.21, pp.1357-1358, (Summary Text)
Funded Projects
2025 - 2025
2025 - 2025Bilim için Aile, Aile için Bilim Şenliği
TUBITAK Project , 4007 - Bilim Şenlikleri Destekleme Programı
Aytan Ü., ALTUN E., EMİNOĞLU A.
2024 - 2025
2024 - 2025Dini İnancın VMAT1/Slc18a1 ve VMAT2/Slc18a2 Gen Ekspresyonları Üzerine Etkisi
TUBITAK Project , 1002 - Quick Support Program
Eminoğlu A. (Executive), Vural M. E.
2024 - 2025
2024 - 2025
DİNİ İNANCIN VMAT2/SLC18A2 GEN EXPRESYONU ÜZERİNE
ETKİSİNİN BELİRLENMESİ
Project Supported by Higher Education Institutions , BAP MSc
(Project Abstract)
EMİNOĞLU A. (Executive), YILDIZ C., VURAL M. E.
2024 - 2025
2024 - 2025
Çay Camellia sinensis L O Kuntze Bitkisi ve Toprağı ile Etkileşimli Fitohormon Degrade Eden Bakterilerin İzolasyonu ve Enzim Aktivitelerinin Belirlenmesi
Project Supported by Higher Education Institutions , BAP MSc
EMİNOĞLU A. (Executive), YILMAZ A.
2024 - 2024
2024 - 2024
Concept Conversations
Project Supported by Higher Education Institutions , University Supported Other Projects
(Project Abstract)
(Project Final Report)
Karadeniz İ., Köse H. İ., Köktaş Y., Eminoğlu A., Alber F.(Executive)
2019 - 2024
2019 - 2024
Çay Bitkisi Gen Havuzunun Oluşturulması ve Ticari Çay Çeşit Adaylarının Belirlenmesi (TÜBİTAK 1007) (İŞ PAKETİ LİDERİ-ARAŞTIRMACI)
TUBITAK Project , 1007 - Public Institutions Research and Development Projects DP
Yazıcı K.(Executive), Akbulut M., Kalkışım Ö., Beriş F. Ş., Dinçer D., Şavşatlı Y., et al.
2020 - 2023
2020 - 2023ÇAY EĞİTİM PROJESİ
Project Supported by Higher Education Institutions , BAP Other
YAZICI K. (Executive), BİLGİN A., AKBULUT M., BERİŞ F. Ş., DİNÇER D., ŞAVŞATLI Y., et al.
2021 - 2022
2021 - 2022“Siyah Rize Çayına Dem Rengini Veren Maddelerin Miktarlarının Dem Rengi Üzerine Etkilerinin Tespit Edilmesi” (TÜBİTAK öğrenci Projesi) (DANIŞMAN)
TUBITAK Project , 2209-A - Üniversite Öğrencileri Araştırma Projeleri Destekleme Programı
Eminoğlu A., Dönmez G.(Executive)
2018 - 2020
2018 - 2020Acanthamoeba castellanii Beta-Glukosidaz (Aca1) geni cDNA’sının klonlanması
Project Supported by Higher Education Institutions , BAP Research Project
Taşkın Kafa A. H.(Executive), Eminoğlu A., Akın Polat Z.
2015 - 2017
2015 - 2017Metabolic Engineering of Cellulolytic Microbes for Production of Biofuels (ARAŞTIRMACI)
Project Supported by Public Organizations in Other Countries
Eminoğlu A., Olson D. G., R. Lynd L.(Executive)
2014 - 2015
2014 - 2015Camellia sinensis (L.) Kuntze (Çay) Bitkisine Ait Sitokrom P450 Monooksijenaz Geninin Klonlanması, Moleküler Karakterizasyonu ve Genetik Polimorfizminin Belirlenmesi (TÜBİTAK 1002) (YÜRÜTÜCÜ)
TUBITAK Project , 1002 - Quick Support Program
Eminoğlu A. (Executive), Aktürk Dizman Y.
2011 - 2013
2011 - 2013polA Geni Açısından Mutant ve Yaban Tip Geobacillus thermoglicosidasius Hücrelerinde Büyüme Hızlarının Karşılaştırılması
Project Supported by Higher Education Institutions , BAP MSc
SANDALLI C.(Executive), SEVİM E., EMİNOĞLU A., SARAL SARIYER A.
Patent
2020
2020Increased ethanol production by thermophilic microorganisms with deletion of individual hfs hydrogenase subunits
Patent
Registered / Approved, The Invention Registration Number: US10619172 , Standard Registration
Activities in Scientific Journals
2026 - Present
2026 - PresentSCIENTIFIC REPORTS
Committee Member
Student Project
2026 - 2026
2026 - 2026Zanaatın İzinde: Rize Merkez Geleneksel Zanaat Belleği ve Haritalama Çalışması
Social Project
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü, Turkey
2026 - 2026
2026 - 2026Şehrin Küçük Sakinleri: Rize Kent Merkezindeki Böcek Çeşitliliğinin iNaturalist ile Belgelenmesi
Social Project
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü, Turkey
2026 - 2026
2026 - 2026Kaldırımın Altındaki Orman: Kentsel Mikro-Habitatlar
Social Project
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü, Turkey
2026 - 2026
2026 - 2026Engelsiz Rota
Social Project
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü, Turkey
Peer Reviews in Scientific Publications
August 2026
August 2026FOOD RESEARCH INTERNATIONAL
Journal Indexed in SCI-E
April 2026
April 2026ECOLOGY AND EVOLUTION
Journal Indexed in SCI-E
October 2024
October 2024PARASITOLOGISTS UNITED JOURNAL
Journal Indexed in ESCI
November 2023
November 2023PARASITOLOGISTS UNITED JOURNAL
Journal Indexed in ESCI
November 2022
November 2022Afyon Kocatepe Üniversitesi Fen ve Mühendislik Bilimleri Dergisi
National Scientific Refreed Journal
March 2021
March 2021Recep Tayyip Erdoğan Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi
National Scientific Refreed Journal
Scientific Project Refereeing
August 2026
August 2026Project Supported by Higher Education Institutions
BAP Research Project, Istanbul University, Turkey
April 2026
April 2026Project Supported by Higher Education Institutions
BAP Research Project, Van Yüzüncü Yil University, Turkey
March 2026
March 2026Project Supported by Higher Education Institutions
BAP Research Project, Istanbul University, Turkey
November 2025
November 2025Project Supported by Higher Education Institutions
BAP Guided, Dokuz Eylul University, Turkey
October 2022
October 2022Project Supported by Higher Education Institutions
BAP Research Project, Hacettepe University, Turkey
December 2020
December 2020Project Supported by Higher Education Institutions
BAP MSc, Akdeniz University, Turkey
Scientific Consultations
2021 - 2022
2021 - 2022Project Consultancy
TÜBİTAK
Recep Tayyip Erdogan University, Fen Edebiyat Fakültesi, Biyoloji Bölümü, Turkey
Roles in Event Organizations
November 2020
November 2020
Uluslararası Biyoçeşitlilik Araştırmaları Sempozyumu
Scientific Congress
Eminoğlu A.
Rize, Turkey
Mobility Activity
2015 - 2017
2015 - 2017Research Scholarship Program
Research During Graduate Education
Dartmouth College, United States Of America
Awards
October 2025
October 2025
Çay Bitkisi Gen Havuzunun Oluşturulması ve Ticari Çay Çeşit Adaylarının Belirlenmesi
Yükseköğretim Kurulu
Congress and Symposium Activities
01 August 2016 - 01 August 2016
01 August 2016 - 01 August 201614th International Conference on the Genetics, Physiology and Synthetic Biology of Solvent- and Acid-forming Clostridia
Attendee
New Hampshire-United States Of America
01 July 2016 - 01 July 2016
01 July 2016 - 01 July 2016SIMB Annual Meeting and Exhibition
Attendee
Louisiana-United States Of America
01 June 2014 - 01 June 2014
01 June 2014 - 01 June 20143rd Molecular Biology and Biotechnology Congress
Attendee
Sarajevo-Bosnia And Herzegovina
01 September 2012 - 01 September 2012
01 September 2012 - 01 September 201221. Ulusal Biyoloji Kongresi
Attendee
İzmir-Turkey
Invited Talks
June 2016
June 2016Engineering the hfs Hydrogenase for Improving Ethanol Production in Thermophilic Bacteria
Workshop
10th BioEnergy Science Center (BESC) Retreat, Chattanooga, TN-United States Of America
Scholarships
2016 - 2017
2016 - 20172214-A - Yurt Dışı Doktora Sırası Araştırma Bursu, Dartmouth College, Thayer School of Engineering, USA
TUBITAK
Citations
Total Citations (WOS): 52
h-index (WOS): 4
Scientific Research / Working Group Memberships
2018 - Present
2018 - PresentÇay ve Çay Ürünleri Uygulama ve Araştırma Merkezi
http://cay.idari.erdogan.edu.tr/
RECEP TAYYİP ERDOĞAN ÜNİVERSİTESİ, Türkiye
2016 - 2017
2016 - 2017